BIM 6065C: Bioinformatics Analysis

Description

Through lectures and computer lab sessions, this mandatory module, worth 1 credit, aims at familiarizing students with 1) databases, 2) network analysis, and 3) modeling of the structure of macromolecule. It includes formal presentations and leading to a variety of assignments.

Module coordinators

François Major, Sébastien Lemieux, Sylvie Mader

Schedule

June 4 to July 31, 2012

Prerequisite

To have completed or to have registered for modules BIM 6064A and BIM 6064C
To have completed or to have registered for modules BIM 6064B or BIM 6064D

Syllabus

 Syllabus for the BIM 6065C module

Lectures

June 4, 9:00 am

Title: Structure of macromolecules: Principles of architecture (lecture)
Speaker: François Major
Location:   Jean-Coutu Pavilion, Room S1-125
Lecture notes:

June 4, 1:00 pm

Title: Structure of macromolecules: Principles of architecture (teaching lab)
Speaker: François Major
Location: André-Aisenstadt Pavilion, Room 1340-A 

June 11, 2:00 pm

Title: Structure of macromolecules II: Proteins (teaching lab)
Speaker: Alexandre Beautrait
Location: André-Aisenstadt Pavilion, Room 1340-A

Lecture notes 

June 18, 9:00 am

Title: Network modeling and analysis (lecture)
Speaker: Nathanael Weill

 Location:  Jean-Coutu Pavilion, Room S1-125
Lecture notes:

June 18, 1:00 pm

Title: Network modeling and analysis (teaching lab)
Speaker: Nathanael Weill

Location: André-Aisenstadt Pavilion, Room 1340-A

July 30, 9:00 am

Title: Comparative genomics: Sequence alignment principles - Use of BLAST (lecture)
Speaker: Jean-Philippe Laverdure
Location: Roger-Gaudry Pavilion, Room M-625
Lecture notes:

July 30, 1:00 pm

Title: Comparative genomics: Sequence alignment principles - Use of BLAST (teaching lab)
Speaker: Jean-Philippe Laverdure
Location: Roger-Gaudry Pavilion, Room M-625

July 31, 9:00 am

Title: Comparative genomics: Phylogeny, databases (lecture)
Speaker: Jean-Philippe Laverdure
Location: Roger-Gaudry Pavilion, Room M-625
Lecture notes:

July 31, 1:00 pm

Title: Comparative genomics: Phylogeny, databases (teaching lab)
Speaker: Jean-Philippe Laverdure
Location: Roger-Gaudry Pavilion, Room M-625